Farm & Ranch
Texas A&M cotton study identifies fiber length, strength traits
By: Kay Ledbetter
Ongoing effort to utilize genotyping in cotton breeding advancements
Writer: Kay Ledbetter, 806-677-5608, skledbetter@ag.tamu.edu
Contact: Dr. Wayne Smith, 979-845-3450, cwsmith@tamu.edu
COLLEGE STATION – Texas A&M University soil and crop sciences department and Texas A&M AgriLife Research are looking at using molecular tools as a solution to the world cotton market’s demand for longer, stronger fibers for spinning and weaving.
Dr. Wayne Smith, associate soil and crops sciences department head in College Station, and his graduate student Kari Hugie, said their ongoing project may not be seeing big dividends right now, but could be pavingthe way for the future.
Smith said upland cotton accounts for the majority of cotton fiber production worldwide. The global market places value on longer and stronger fibers, mandating U.S. breeders develop cultivars to meet this demand and remain competitive with man-made fibers.
One challenge breeders face concerning the improvement of fiber quality traits is low genetic diversity among elite, agronomically acceptable genotypes of upland cotton. The use of DNA marker-assisted selection could help breeders access unexploited genetic diversity as well as facilitate the simultaneous improvement of both yield and fiber quality traits, he said.
Recent quantitative trait loci, or QTL, mapping studies have led to the discovery of hundreds of QTL for fiber length and strength, and many of them show promise for use in marker-assisted selection, Smith said.
However, there are few reports of public programs utilizing marker-assisted selection for the improvement of fiber quality traits, he said. In general, there has been inconsistency among QTL discovered across studies and the QTL discovered generally are considered specific to the mapping populations in which they were discovered. Both are major obstacles preventing the use of marker-assisted selection for fiber quality.
Smith, along with Hugie, a Cotton Incorporated Fellow and doctoral student, began the project, “Identification of Robust Microsatellite Markers for Fiber Quality in Gossypium hirsutum,” to determine which of the publically available markers can be used in marker-assisted improvement of fiber quality in his program.
“The U.S. exports most of its cotton, because companies find it more economical to export our fiber, process it in other countries, and then import the finished textiles back into the U.S.,” Hugie said. “Thus, the U.S. now competes with raw cotton production globally, and improved fiber length will help our producers compete in this global marketplace.”
Hugie said in her research, she was looking for segments of DNA on cotton chromosomes related to fiber length and strength.
“We were looking for landmarks, or DNA markers, on chromosomes that we could use to identify these traits,” she said. “Instead of harvesting the cotton and sending fibers to a lab for fiber quality analysis to get information on length and strength, maybe we could just obtain the DNA and harvest only desirable plants without having to harvest the undesirable plants and thus save labor cost and improve breeding efficiency.
“What we found were DNA markers that are stably associated with fiber quality traits across diverse genetic backgrounds in the breeding program, but individually they really don’t increase length or strength tremendously,” Hugie said.
“But, research continues at Texas A&M with Dr. Hongbin Zhang and others to identify multiple QTL that together could provide selection techniques giving major improvements,” Smith said.
Zhang is professor of plant genomics and systems biology and director of the Laboratory for Plant Genomics and Molecular Genetics in College Station.
The study screened a total of 223 publically available DNA markers. Of that number, 55 markers were significantly associated with fiber length and 50 markers were significantly associated with fiber strength. Those numbers were narrowed down to subsets of three or four markers, which were then used in the selection of progeny rows across three different populations in the breeding program, Hugie said.
There was a significant difference in the mean fiber length and fiber strength between marker selected and non-selected progeny rows, she said. They also observed a differential response to marker-assisted selection across the three populations, which most likely is attributable to genetic background effects.
Still, Hugie said, the results demonstrate that the identified markers for fiber length and strength are reasonably stable across diverse genetic backgrounds.
“Our results suggest that the current, publicly available markers for fiber quality QTL are not yet a cost-effective alternative to field-based selection for the improvement of fiber quality considering the minor increase in trait means observed and the small amount of variation in length and strength accounted for by the markers,” Smith said.
“As genotyping costs continue to decrease relative to phenotyping costs, molecular breeding approaches that better capture phenotypic variation across different genetic backgrounds, such as mapping-as-you-go and genomic selection, may prove to be more efficient and cost effective methods for the improvement of fiber quality in cotton,” he said.
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Farm & Ranch
Frog Fruit
By Tony Dean, tonydean.tx1@gmail.com
Frog fruit is a native, low-growing perennial forb adapted to most of the eastern U.S., but few grazers know it well. It contributes more to our plant communities than we realize. It generally grows no more than a few inches tall and roots at the nodes. It can form dense mats several feet across and develop runners up to 3 feet long.
The leaves are thick, one to two inches long and 3/8 inch wide, and toothed from the middle to the tip. Tiny white flowers form a ring around a flower head, and the head then elongates into a cylinder an inch long or longer. Frog fruit has a four-angled stem.
Frog fruit can grow almost anywhere in Texas and on many soil types. It can grow in drier soils and likes good drainage, but it needs additional moisture to survive the hottest months. You can find it almost anywhere in a pasture, though it often grows in depressions and near water sources.
“Frog fruit is used as forage by livestock and deer. I recall an instance when I was moving cattle from one pasture to the next on a Jack County ranch. As I opened the gate, I stood by a beautiful green plant of switchgrass which I expected to be immediately grazed down. The cattle walked right by the switchgrass and stuck their heads in a small patch of frog fruit a few feet away,” Dean said.
Frog fruit is gaining popularity as a ground cover for homes and gardens for these reasons:
- Frog fruit grows quickly, maybe too quickly. If it gets out of bounds, you can always trim it back.
- Frog fruit is low maintenance. Once you get it established with adequate watering, it can survive with little care.
- Frog fruit has a long bloom period, from April to October.
- It is a host plant for several butterfly species and other insects.
Farm & Ranch
Theileria orientalis
By Barry Whitworth, DVM
Over the past few years, veterinarians have detected Theileria orientalis in Oklahoma cattle. Early cases were primarily diagnosed in adult cattle, but more recent Oklahoma cases have been identified in stocker cattle. All cattle producers should be familiar with the clinical signs of this disease and check their cattle daily for signs of trouble.
The first U.S. case of theileriosis was identified in Virginia in August 2017. Those cattle showed weakness and anemia, and veterinarians made an initial diagnosis of anaplasmosis. Blood samples from the animals were tested for Anaplasma, Babesia and Leptospira. Results were negative for all three, but the tests revealed a blood protozoan, later identified as T. orientalis genotype Ikeda. Since that first herd outbreak, the organism has been detected in several states.
Cattle sick with T. orientalis genotype Ikeda may show fever, weakness, anorexia and exercise intolerance. If forced to move, affected cattle may stagger and gasp for air. If stressed excessively, they may collapse and die. On examination, the gums, eyes or vaginal mucosa may appear pale (white) or yellow. Reproductive losses, including stillbirths and late-term abortions, may occur, along with a drop in milk production.
Clinical signs reported in adult cattle in Oklahoma include anemia, sudden death, weight loss, abortion, failure to thrive and failure to calve. In stocker cattle, producers have reported weight loss, anemia, poor performance and sudden death.
Because Anaplasma marginale and T. orientalis genotype Ikeda produce similar clinical signs, telling the two apart can be difficult. One difference is that clinical signs are more common in young cattle infected with T. orientalis than in young cattle infected with A. marginale. Cattle with anaplasmosis also often display aggression, while those with T. orientalis genotype Ikeda typically do not. A laboratory test is required to tell the two diseases apart with certainty.
Researchers have identified Haemaphysalis longicornis as a possible vector of T. orientalis genotype Ikeda. In 2017, the U.S. Department of Agriculture’s (USDA) National Veterinary Services Laboratories (NVSL) confirmed the presence of H. longicornis, commonly called the Asian longhorned tick (ALT) or bush tick. While trying to determine how the tick arrived in the United States, USDA officials discovered it had been present in West Virginia as early as 2010. The tick has now been confirmed in at least 26 states, including Oklahoma. Some evidence suggests other insect vectors may also transmit T. orientalis genotype Ikeda. Needle transfer is another possible route of transmission.
The ALT has been identified in Craig and Mayes counties in Oklahoma. This tick thrives in areas with high humidity, such as wooded regions, brush or tall grass. Ticks are often found where large numbers of wildlife gather, such as along deer trails. Producers can find more information about the ALT on the USDA website at https://www.aphis.usda.gov/livestock-poultry-disease/cattle/ticks/asian-longhorned.
Other countries have developed treatments for T. orientalis, but no approved treatments are available in the United States, and no vaccine exists for this disease. The best defense is prevention: buying cattle free of the organism, avoiding blood transfer between animals and using effective tick control. Producers should purchase cattle from reputable sources. Clean instruments between animals during procedures such as castration or dehorning, and change needles between every animal. Control external parasites with appropriate insecticide treatments. Pasture management also helps, such as rotating cattle away from wooded or brushy areas where ticks thrive. Patch burning may also help reduce tick populations.
Theileria orientalis remains a concern for some cow/calf and stocker producers in Oklahoma. Producers who want more information about T. orientalis genotype Ikeda should contact their local veterinarian or Oklahoma State University County Extension agriculture educator.
References
Hammer, J. F., Emery, D., Bogema, D. R., & Jenkins, C. (2015). Detection of Theileria orientalis genotypes in Haemaphysalis longicornis ticks from southern Australia. Parasites & Vectors, 8, 229.
Oakes, V. J., Yabsley, M. J., Schwartz, D., LeRoith, T., Bissett, C., Broaddus, C., Schlater, J. L., Todd, S. M., Boes, K. M., Brookhart, M., & Lahmers, K. K. (2019). Theileria orientalis Ikeda genotype in cattle, Virginia, USA. Emerging Infectious Diseases, 25(9), 1653-1659.
Spickler, Anna Rovid. (2019). Theileriosis. Retrieved from http://www.cfsph.iastate.edu/DiseaseInfo/factsheets.php.
Watts, J. G., Playford, M. C., & Hickey, K. L. (2016). Theileria orientalis: A review. New Zealand Veterinary Journal, 64(1), 3-9.
Farm & Ranch
Is the Pond Safe for Livestock?
By OKFR Staff
During the hottest part of summer, a farm pond can look like a welcome source of water. Cattle may be standing belly-deep along the bank, and the pond may still hold enough water to seem dependable. Looks alone won’t tell you whether that water is safe.
Hot weather, limited rainfall and falling pond levels can create water-quality problems. As water evaporates, salts, minerals, nutrients and other substances become more concentrated. Warm, still water can also encourage blue-green algae, and some forms can produce toxins capable of killing livestock.
Producers sometimes treat water as an afterthought compared to grass, hay and supplemental feed. Livestock need a dependable supply of clean water to maintain feed intake, regulate body temperature and support production. Poor-quality water can reduce consumption and performance even when it does not cause obvious poisoning.
A pond that has watered cattle for years is not safe under every set of conditions. Pay particular attention during drought, extreme heat or any period when the water level drops significantly.
Watch the Water and the Livestock
One of the most serious late-summer concerns is a bloom of cyanobacteria, commonly called blue-green algae. These organisms live naturally in many bodies of water, and most do not produce dangerous toxins. The risk rises when certain toxin-producing species multiply rapidly under favorable conditions.
According to Oklahoma State University Extension, toxic blue-green algal blooms typically develop in standing water after periods of hot, dry, calm weather. Nutrients such as nitrogen and phosphorus can fuel excessive growth. Those nutrients may reach a pond through manure, fertilizer runoff, soil erosion and decaying vegetation.
A suspicious bloom may turn the water bright green, blue-green, pea-soup green or even brownish. Scum, foam or mats may collect along the shoreline, particularly where the wind pushes floating material into one area. Some blooms look like spilled paint.
Not every green pond is poisonous. Common aquatic plants and harmless algae can also change the color or surface of the water. You usually cannot tell whether a bloom is toxic by looking at it, and a pond can contain toxin-producing cyanobacteria without showing every commonly described warning sign.
Keep livestock, horses, pets and people away from water that has an unusual color, heavy surface scum, a bad odor or unexplained dead fish or wildlife nearby. Do not let livestock drink from another part of the same pond on the assumption that the water is safe there. Wind can move a bloom, and toxin levels may vary across the pond.
Blue-green algae can produce toxins that affect the nervous system or liver. Depending on the toxin and the amount consumed, affected animals may develop weakness, staggering, difficulty breathing, tremors, convulsions, diarrhea or collapse. In severe cases, owners find animals dead near the water before realizing anything is wrong. Treatment often fails, which makes prevention especially important.
Treat any suspected poisoning as an emergency. Move the herd away from the water source without driving or stressing animals that may already be affected. Provide another clean water supply and contact a veterinarian immediately. Your county Extension office can also help you determine where and how to submit a water sample.
Blue-green algae is not the only potential problem. Pond water may contain elevated levels of dissolved salts, sulfates, nitrates, bacteria or other contaminants. Runoff can carry manure, fertilizer, pesticides and organic matter into the pond. Low water levels make some of these problems worse because the remaining water grows more concentrated.
Water with excessive dissolved solids may taste bitter or salty, so animals drink less of it. Depending on the substances involved and their concentrations, poor-quality water may contribute to diarrhea, reduced feed intake, poor weight gain or other health concerns. Young animals and livestock that are not used to the water may be more vulnerable.
Watch the cattle themselves, too. Are they reluctant to drink? Are they crowding around a different water source? Has feed intake or weight gain dropped without an obvious explanation? Are several animals having digestive problems? Changes across multiple animals can be an early clue that you need to look at the feed or water.
OSU Extension recommends collecting a representative sample and submitting it for a livestock water test whenever you suspect a water supply is harming animal health or performance. A standard livestock water test covers several characteristics, but blue-green algae can require different sampling and testing procedures. Contact the laboratory or county Extension office before collecting the sample so you take it from the right location, use the proper container and handle it correctly.
Reduce Problems Before They Develop
Good pond management cannot eliminate every water-quality problem, but it can lower the risk. One of the most effective steps is limiting the manure, soil and nutrients that enter the water.
Cattle with unrestricted access to an entire pond can damage the banks, muddy the water and deposit large amounts of manure in or near it. Hoof traffic strips vegetation and speeds erosion. Sediment fills the pond over time, while manure supplies nutrients that can encourage excessive algae growth.
Where practical, fence livestock away from most of the pond and provide a limited-access watering point. Another option is piping water to a trough below the dam or elsewhere in the pasture. OSU notes that reducing cattle manure in the pond can reduce the conditions that favor toxic algae and make the water more palatable.
A vegetated buffer around the pond can slow runoff and trap soil and nutrients before they reach the water. Apply fertilizer and manure carefully in the watershed, particularly before heavy rain, and do not let large amounts of hay, feed or organic debris pile up at the water’s edge.
Alternative watering systems need maintenance, too. Check troughs for algae, manure, drowned animals and other contamination. Install wildlife escape ramps in tanks so birds and small animals can climb out instead of drowning and fouling the water.
Be cautious about treating a pond on your own. Some owners use copper sulfate and other algaecides for algae control, but improper treatment can create new problems. Killing a large amount of algae or aquatic vegetation at once can deplete dissolved oxygen as the material decomposes, which can lead to a fish kill. Treatment may also release toxins from affected cyanobacteria into the water. Base any chemical application on proper identification and professional recommendations, not guesswork.
Livestock should always have enough water for the weather, their size and their stage of production. Demand rises sharply in hot weather, and a pond that barely meets the herd’s needs in spring may fall short in August. Check the source regularly instead of waiting for cattle to gather around a muddy shoreline.
Ponds can fool you. Crystal-clear water isn’t always safe, and a green pond doesn’t always mean toxic algae. Regular observation, testing and prevention are the best ways to keep a pond safe for your herd.
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